Glyma10g08300 - SoyBase

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Report for Sequence Feature Glyma10g08300

Feature Type:	gene_model
Chromosome:	Gm10
Start:	7108119
stop:	7112918
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g08300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52820	AT	Annotation by Michelle Graham. TAIR10: purple acid phosphatase 22 \| chr3:19574236-19576938 REVERSE LENGTH=434	SoyBase	E_val: 0	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003993	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1378	KOG	Purple acid phosphatase	JGI		ISS
PTHR22953	Panther	ACID PHOSPHATASE RELATED	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
UniRef100_G7L615	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Purple acid phosphatase n=1 Tax=Medicago truncatula RepID=G7L615_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233CF8B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CF8B related cluster n=1 Tax=unknown RepID=UPI000233CF8B	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma10g08300

Locus	Gene Symbol	Protein Name
	PAP21	Purple acid phosphatase 21 gene
	PAP21	Purple acid phosphatase gene 21

Expression Patterns of Glyma10g08300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g08300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g071000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g08300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g08300

Limit To All Plant Sequences

>Glyma10g08300.2   sequence type=CDS   gene model=Glyma10g08300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAATGTAACAAGTCTCTTGTCGTGATTCTCCTCCTCCTTCACATCCTATGCTTGCAATCACAAGTGAATGGTTTTTCTCGTCAACCTTCTCGCCAGTTAATCTTCACACCCCACAAACGTTCGGATTCTGATCCTCAACAGGTGCACATTTCGTTGGTGGGCAATGATCATATGAGGGTGTCATGGATAACCGATGACAAACACTCAGAATCTGTGGTGGAGTATGGAACAAAGAAAGGTGAATATAGCACAAAAGCAACGGGGGAACACACTTCATACCATTATTTCTTGTACGAATCCGGCAAGATCCACCATGTGGTAATTGGGCCTCTTCAGCCCAACACAATTTACTACTACAGGTGCGGAGGATCGGGTTCTGAGTTTTCCTTCAAGACACCTCCACTAAAGTTGCCTATTGAATTTGTTGTCGTTGGGGATTTGGGACAAACTGAATGGACAACATCAACCCTAAAACATGTGGATAGCAAAGACTATGATGTGTTTCTACTACCTGGAGATCTATCCTATGCTGATACCCATCAACCTCTATGGGACTCCTTTGGTCGTTTGGTGGAACCCTACGCTAGTCGTATACCATGGATGGTTACAGAAGGCAACCATGAAATCGAAACTTTCCCCATTATCCAACCAAATGGTTTCAAGGCCTACAATGCTCGTTGGCCCATGCCATACAAGGAAAGTGGCTCCACCTCAAACCTCTATTACTCATTTGATGTTGCTAGCACCCACGTCATCATGTTGGGCTCTTACACAGATTTTGATGCACACTCCCAACAATACACGTGGCTTCAATCTGACCTAGCTAAGATTGATAGGAAGAGGACGCCTTGGGTGATTGCATTGTTGCATGCACCTTGGTATAATACTAATGAGGCACATCAAGGTGAAGGTGAAGACATGAGACAGGCCATGGAAGAGTTGCTTTATGAAGCTCGTGTTGACTTGGTCTTTGCTGGCCATGTTCATGCATATGAACGCTTTACTCGAATTTATGACAATAAGGCTGATTCATGTGGTCCGTTGTACGTGACGATTGGAGACGGAGGAAACCGTGAGGGGCTTGCATTAAGTTTAAGAAGCCTCCTAGCCCACTTTCTTTGTATCGGGAGCCAAGCTTTGGTCATGGAAGGTTGA

Predicted protein sequences of Glyma10g08300

Limit To All Plant Sequences

>Glyma10g08300.2   sequence type=predicted peptide   gene model=Glyma10g08300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKCNKSLVVILLLLHILCLQSQVNGFSRQPSRQLIFTPHKRSDSDPQQVHISLVGNDHMRVSWITDDKHSESVVEYGTKKGEYSTKATGEHTSYHYFLYESGKIHHVVIGPLQPNTIYYYRCGGSGSEFSFKTPPLKLPIEFVVVGDLGQTEWTTSTLKHVDSKDYDVFLLPGDLSYADTHQPLWDSFGRLVEPYASRIPWMVTEGNHEIETFPIIQPNGFKAYNARWPMPYKESGSTSNLYYSFDVASTHVIMLGSYTDFDAHSQQYTWLQSDLAKIDRKRTPWVIALLHAPWYNTNEAHQGEGEDMRQAMEELLYEARVDLVFAGHVHAYERFTRIYDNKADSCGPLYVTIGDGGNREGLALSLRSLLAHFLCIGSQALVMEG*

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